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Source papers, claims, scoring, and embedding config are recovered; generation-time metadata (exact git commit at gen time, host, exact command) is not recoverable.","source_papers":[{"doi":"10.1007/s10072-024-07795-z","pmid":"39466324","year":2024,"roles":["mediator_outcome"],"title":"Clinical and biochemical assessments of circulating High Mobility Group Box Protein1 in children with epilepsy: relation to cognitive function and drug responsiveness","journal":"Neurol Sci","work_id":124693,"publication_date":"2024-10-28"},{"doi":"10.3389/fphar.2023.1195567","pmid":"37324499","year":2023,"roles":["drug_mediator"],"title":"The elucidation of the anti-inflammatory mechanism of EMO in rheumatoid arthritis through an integrative approach combining bioinformatics and experimental verification","journal":"Front Pharmacol","work_id":292490,"publication_date":"2023-06-01"},{"doi":"10.1111/jvim.15940","pmid":"33150666","year":2020,"roles":["mediator_outcome"],"title":"Evaluation of serum high-mobility group box 1 concentration in dogs with epilepsy: A case-control study","journal":"J Vet Intern Med","work_id":43426,"publication_date":"2020-11-01"},{"doi":"10.14715/cmb/2020.66.3.6","pmid":"32538745","year":2020,"roles":["mediator_outcome"],"title":"Correlation of MMP-9 and HMGB1 expression with the cognitive function in patients with epilepsy and factors affecting the prognosis","journal":"Cell Mol Biol (Noisy-le-grand)","work_id":39136,"publication_date":"2020-06-08"},{"doi":"10.1590/1414-431x20197374","pmid":"31241711","year":2019,"roles":["mediator_outcome"],"title":"Circulating high mobility group box-1 and toll-like receptor 4 expressions increase the risk and severity of epilepsy","journal":"Braz J Med Biol Res","work_id":33710,"publication_date":"2019-01-01"}],"source_paper_count":5,"extracted_claims":[{"side":"drug_mediator","object":"HMGB1","context":"in rheumatoid arthritis","subject":"EMO","work_id":292490,"claim_id":230447,"polarity":"positive","predicate":"inhibits","confidence":0.6,"extraction_run_id":29},{"side":"mediator_outcome","object":"epilepsy","context":"serum of epilepsy patients vs healthy controls","subject":"HMGB1","work_id":33710,"claim_id":17640,"polarity":"positive","predicate":"correlates_with","confidence":0.95,"extraction_run_id":14},{"side":"mediator_outcome","object":"epilepsy","context":"in peripheral blood of patients with epilepsy compared to healthy controls","subject":"HMGB1","work_id":39136,"claim_id":21623,"polarity":"positive","predicate":"associated_with","confidence":0.9,"extraction_run_id":14},{"side":"mediator_outcome","object":"epilepsy","context":"in dogs","subject":"HMGB1","work_id":43426,"claim_id":25106,"polarity":"positive","predicate":"associated_with","confidence":0.9,"extraction_run_id":14},{"side":"mediator_outcome","object":"epilepsy","context":"in dogs with idiopathic epilepsy and disease course >3 months vs ≤3 months","subject":"HMGB1","work_id":43426,"claim_id":25108,"polarity":"positive","predicate":"associated_with","confidence":0.85,"extraction_run_id":14},{"side":"mediator_outcome","object":"epilepsy","context":"in children","subject":"HMGB1","work_id":124693,"claim_id":89942,"polarity":"positive","predicate":"associated_with","confidence":0.95,"extraction_run_id":20}],"extracted_claim_count":6,"extraction":{"model":"deepseek-v4-flash","model_source":"configured","prompt_version":"v1_2026_05_07","run_ids":[14,20,29]},"bridge":{"a_to_b_predicate":"inhibits","b_to_c_predicate":"correlates_with","a_to_b_evidence_count":1,"b_to_c_evidence_count":5,"edge_support_log_ab":0.6931471805599453,"edge_support_log_bc":1.791759469228055,"novelty_factor":1.0,"direct_a_to_c_count":0},"embedding":{"model":"bge-m3","dim":1024,"max_length":8192,"similarity_scores":{}},"scoring":{"method":"swanson_abc_log_evidence_with_novelty_penalty","formula":"score = min((log(ab+1) + log(bc+1)) * novelty / 10, 1.0); novelty = 1.0 if direct==0 else 0.7 / (direct+1)","score_raw":0.24849066497880004,"score":0.24849066497880004,"quality_tier":"mid","quality_reason":null},"pipeline_run":{"id":4,"run_uuid":"eb8b7730-d92e-4cd5-95dd-95f6c5d62cc2","command":"scripts/backfill_provenance_v2.py:v2_2026_05_12","status":"completed","git_commit":"9996ffaa56e9b7cd5f677bd8203624c2c18aa000","host":"MacBook-Pro-Daniel96.local","started_at":"2026-05-12T21:35:53.363326+00:00","ended_at":"2026-05-12T21:43:41.903387+00:00","notes":"Retroactive provenance backfill on 2026-05-13 for snapshot v2_2026_05_12. Synthetic pipeline_runs row — original generation run records are lost (pre-date provenance schema). All recoverable fields populated from current DB state (claims, works, repurposing_hypotheses); pipeline_run record is synthetic, hence completeness='partial_backfill'.\nBackfilled 1,618 provenance rows. Source papers: avg=3.73, zero=0. Claims matched: avg=4.09, zero=0.\nRefreshed 1,618 provenance rows. Source papers: avg=3.73, zero=0. Claims matched: avg=4.09, zero=0.\nRefreshed 1,618 provenance rows. Source papers: avg=3.73, zero=0. Claims matched: avg=4.09, zero=0.","domains":["als","alzheimer","depression","epilepsy","glioblastoma","inflammatory_bowel_disease","multiple_sclerosis","pancreatic_cancer","rheumatoid_arthritis","type_2_diabetes"]},"generated_at":"2026-05-12T21:43:40.945575+00:00"}