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Source papers, claims, scoring, and embedding config are recovered; generation-time metadata (exact git commit at gen time, host, exact command) is not recoverable.","source_papers":[{"doi":"10.3389/fnins.2024.1296876","pmid":"38449733","year":2024,"roles":["mediator_outcome"],"title":"Meta-analysis of MMP-9 levels in the serum of patients with epilepsy","journal":"Front Neurosci","work_id":128338,"publication_date":"2024-02-21"},{"doi":"10.3390/cells12030368","pmid":"36766708","year":2023,"roles":["mediator_outcome"],"title":"Blood-Brain Barrier-Associated Proteins Are Elevated in Serum of Epilepsy Patients","journal":"Cells","work_id":32021,"publication_date":"2023-01-19"},{"doi":"10.1016/j.bbrep.2021.100934","pmid":"33604457","year":2021,"roles":["drug_mediator"],"title":"The study of gp130/the inflammatory factors regulating osteoclast differentiation in rheumatoid arthritis","journal":"Biochem Biophys Rep","work_id":302837,"publication_date":"2021-02-07"},{"doi":"10.14715/cmb/2020.66.3.6","pmid":"32538745","year":2020,"roles":["mediator_outcome"],"title":"Correlation of MMP-9 and HMGB1 expression with the cognitive function in patients with epilepsy and factors affecting the prognosis","journal":"Cell Mol Biol (Noisy-le-grand)","work_id":39136,"publication_date":"2020-06-08"}],"source_paper_count":4,"extracted_claims":[{"side":"drug_mediator","object":"MMP-9","context":"in osteoclast supernatant","subject":"gp130 monoclonal antibody","work_id":302837,"claim_id":262783,"polarity":"positive","predicate":"downregulates","confidence":0.7,"extraction_run_id":29},{"side":"mediator_outcome","object":"epilepsy","context":"serum of epilepsy patients in interictal period","subject":"MMP-9","work_id":32021,"claim_id":15644,"polarity":"positive","predicate":"associated_with","confidence":0.9,"extraction_run_id":14},{"side":"mediator_outcome","object":"epilepsy","context":"in peripheral blood of patients with epilepsy compared to healthy controls","subject":"MMP-9","work_id":39136,"claim_id":21622,"polarity":"positive","predicate":"associated_with","confidence":0.9,"extraction_run_id":14},{"side":"mediator_outcome","object":"epilepsy","context":"serum levels in overall population","subject":"MMP-9","work_id":128338,"claim_id":94848,"polarity":"positive","predicate":"associated_with","confidence":0.9,"extraction_run_id":20},{"side":"mediator_outcome","object":"epilepsy","context":"serum levels in adult patients","subject":"MMP-9","work_id":128338,"claim_id":94849,"polarity":"positive","predicate":"associated_with","confidence":0.9,"extraction_run_id":20},{"side":"mediator_outcome","object":"epilepsy","context":"serum levels in pediatric patients","subject":"MMP-9","work_id":128338,"claim_id":94850,"polarity":"negative","predicate":"associated_with","confidence":0.8,"extraction_run_id":20},{"side":"mediator_outcome","object":"epilepsy","context":"serum levels in patients with active seizures","subject":"MMP-9","work_id":128338,"claim_id":94851,"polarity":"positive","predicate":"associated_with","confidence":0.9,"extraction_run_id":20},{"side":"mediator_outcome","object":"epilepsy","context":"serum levels in seizure-free patients","subject":"MMP-9","work_id":128338,"claim_id":94852,"polarity":"positive","predicate":"associated_with","confidence":0.85,"extraction_run_id":20}],"extracted_claim_count":8,"extraction":{"model":"deepseek-v4-flash","model_source":"configured","prompt_version":"v1_2026_05_07","run_ids":[14,20,29]},"bridge":{"a_to_b_predicate":"downregulates","b_to_c_predicate":"associated_with","a_to_b_evidence_count":1,"b_to_c_evidence_count":7,"edge_support_log_ab":0.6931471805599453,"edge_support_log_bc":2.0794415416798357,"novelty_factor":1.0,"direct_a_to_c_count":0},"embedding":{"model":"bge-m3","dim":1024,"max_length":8192,"similarity_scores":{}},"scoring":{"method":"swanson_abc_log_evidence_with_novelty_penalty","formula":"score = min((log(ab+1) + log(bc+1)) * novelty / 10, 1.0); novelty = 1.0 if direct==0 else 0.7 / (direct+1)","score_raw":0.2772588722239781,"score":0.2772588722239781,"quality_tier":"high","quality_reason":null},"pipeline_run":{"id":4,"run_uuid":"eb8b7730-d92e-4cd5-95dd-95f6c5d62cc2","command":"scripts/backfill_provenance_v2.py:v2_2026_05_12","status":"completed","git_commit":"9996ffaa56e9b7cd5f677bd8203624c2c18aa000","host":"MacBook-Pro-Daniel96.local","started_at":"2026-05-12T21:35:53.363326+00:00","ended_at":"2026-05-12T21:43:41.903387+00:00","notes":"Retroactive provenance backfill on 2026-05-13 for snapshot v2_2026_05_12. Synthetic pipeline_runs row — original generation run records are lost (pre-date provenance schema). All recoverable fields populated from current DB state (claims, works, repurposing_hypotheses); pipeline_run record is synthetic, hence completeness='partial_backfill'.\nBackfilled 1,618 provenance rows. Source papers: avg=3.73, zero=0. Claims matched: avg=4.09, zero=0.\nRefreshed 1,618 provenance rows. Source papers: avg=3.73, zero=0. Claims matched: avg=4.09, zero=0.\nRefreshed 1,618 provenance rows. Source papers: avg=3.73, zero=0. Claims matched: avg=4.09, zero=0.","domains":["als","alzheimer","depression","epilepsy","glioblastoma","inflammatory_bowel_disease","multiple_sclerosis","pancreatic_cancer","rheumatoid_arthritis","type_2_diabetes"]},"generated_at":"2026-05-12T21:43:40.945575+00:00"}