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Source papers, claims, scoring, and embedding config are recovered; generation-time metadata (exact git commit at gen time, host, exact command) is not recoverable.","source_papers":[{"doi":"10.1038/s41398-026-03960-4","pmid":"41876463","year":2026,"roles":["mediator_outcome"],"title":"Prediction of depressive episodes based on clinical features, cognitive characteristics, inflammation-related proteins, and EEG data","journal":"Transl Psychiatry","work_id":195659,"publication_date":"2026-03-24"},{"doi":"10.1016/j.trsl.2025.02.004","pmid":"39986536","year":2025,"roles":["drug_mediator"],"title":"Effects of senotherapeutics on gut microbiome dysbiosis and intestinal inflammation in Crohn's disease: A pilot study","journal":"Transl Res","work_id":277432,"publication_date":"2025-02-20"},{"doi":"10.9758/cpn.2021.19.3.449","pmid":"34294614","year":2021,"roles":["mediator_outcome"],"title":"White Matter Alterations Associated with Pro-inflammatory Cytokines in Patients with Major Depressive Disorder","journal":"Clin Psychopharmacol Neurosci","work_id":78016,"publication_date":"2021-07-23"},{"doi":"10.5498/wjp.v10.i8.175","pmid":"32874955","year":2020,"roles":["mediator_outcome"],"title":"Serum levels of chemokines in adolescents with major depression treated with fluoxetine","journal":"World J Psychiatry","work_id":78459,"publication_date":"2020-08-13"},{"doi":"10.1097/md.0000000000014419","pmid":"30762747","year":2019,"roles":["mediator_outcome"],"title":"High concentrations of serum interleukin-6 and interleukin-8 in patients with bipolar disorder","journal":"Medicine (Baltimore)","work_id":76525,"publication_date":"2019-02-01"}],"source_paper_count":5,"extracted_claims":[{"side":"drug_mediator","object":"IL-8","context":"in Caco-2/THP1 co-culture model of IBD","subject":"D+Q","work_id":277432,"claim_id":251107,"polarity":"positive","predicate":"induces","confidence":0.9,"extraction_run_id":31},{"side":"mediator_outcome","object":"major depressive disorder","context":"serum levels in patients","subject":"IL-8","work_id":76525,"claim_id":75597,"polarity":"negative","predicate":"associated_with","confidence":0.8,"extraction_run_id":18},{"side":"mediator_outcome","object":"major depressive disorder","context":"in a cohort of 22 patients with MDD and 22 healthy controls","subject":"IL-8","work_id":78016,"claim_id":77286,"polarity":"positive","predicate":"associated_with","confidence":0.9,"extraction_run_id":18},{"side":"mediator_outcome","object":"major depressive disorder","context":"adolescents","subject":"IL-8","work_id":78459,"claim_id":77906,"polarity":"positive","predicate":"associated_with","confidence":0.9,"extraction_run_id":18},{"side":"mediator_outcome","object":"major depressive disorder","context":"in patients with major depressive disorder compared to healthy controls","subject":"IL-8","work_id":195659,"claim_id":140024,"polarity":"positive","predicate":"associated_with","confidence":0.9,"extraction_run_id":24}],"extracted_claim_count":5,"extraction":{"model":"deepseek-v4-flash","model_source":"configured","prompt_version":"v1_2026_05_07","run_ids":[18,24,31]},"bridge":{"a_to_b_predicate":"induces","b_to_c_predicate":"associated_with","a_to_b_evidence_count":1,"b_to_c_evidence_count":4,"edge_support_log_ab":0.6931471805599453,"edge_support_log_bc":1.6094379124341003,"novelty_factor":1.0,"direct_a_to_c_count":0},"embedding":{"model":"bge-m3","dim":1024,"max_length":8192,"similarity_scores":{}},"scoring":{"method":"swanson_abc_log_evidence_with_novelty_penalty","formula":"score = min((log(ab+1) + log(bc+1)) * novelty / 10, 1.0); novelty = 1.0 if direct==0 else 0.7 / (direct+1)","score_raw":0.23025850929940456,"score":0.23025850929940456,"quality_tier":"mid","quality_reason":null},"pipeline_run":{"id":4,"run_uuid":"eb8b7730-d92e-4cd5-95dd-95f6c5d62cc2","command":"scripts/backfill_provenance_v2.py:v2_2026_05_12","status":"completed","git_commit":"9996ffaa56e9b7cd5f677bd8203624c2c18aa000","host":"MacBook-Pro-Daniel96.local","started_at":"2026-05-12T21:35:53.363326+00:00","ended_at":"2026-05-12T21:43:41.903387+00:00","notes":"Retroactive provenance backfill on 2026-05-13 for snapshot v2_2026_05_12. Synthetic pipeline_runs row — original generation run records are lost (pre-date provenance schema). All recoverable fields populated from current DB state (claims, works, repurposing_hypotheses); pipeline_run record is synthetic, hence completeness='partial_backfill'.\nBackfilled 1,618 provenance rows. Source papers: avg=3.73, zero=0. Claims matched: avg=4.09, zero=0.\nRefreshed 1,618 provenance rows. Source papers: avg=3.73, zero=0. Claims matched: avg=4.09, zero=0.\nRefreshed 1,618 provenance rows. Source papers: avg=3.73, zero=0. Claims matched: avg=4.09, zero=0.","domains":["als","alzheimer","depression","epilepsy","glioblastoma","inflammatory_bowel_disease","multiple_sclerosis","pancreatic_cancer","rheumatoid_arthritis","type_2_diabetes"]},"generated_at":"2026-05-12T21:43:40.945575+00:00"}